Tazro Inutano Ohta

nextflow docker container does not have conda inside

1

what? then I had to create this one https://github.com/inutano/docker-nextflow-with-conda perhaps we can replace the current one in `run.sh`

use tmpdir/tmp_outdir prefix settings on --no-container execution

4

This fix is originally suggested by @alexbarrera on #167, correctly enables two options `--tmpdir-prefix` and `--tmp-outdir-prefix` on execution with the `--no-container` flag is used, which did not resolved by #244.

Found when debugging https://github.com/common-workflow-library/bio-cwl-tools/blob/release/fastqc/fastqc_2.cwl , it stops running while downloading the schema but no message was shown

Genome assembly changes to save data storage Major change ideas - Add CUT&Tag sequencing? - https://www.nature.com/articles/s41467-019-09982-5.pdf - Additional organisms (`Arabidopsis thaliana`?) - Curation cost? - New experiment filtering criteria? -...

- change to download reference file when update the database, use local file to load to the memory