chip-atlas

chip-atlas copied to clipboard

use 3.1.3

1

inutano

Bumps [sinatra](https://github.com/sinatra/sinatra) from 2.2.0 to 2.2.3. Changelog Sourced from sinatra's changelog. 2.2.3 / 2022-11-25 Fix: Escape filename in the Content-Disposition header. #1841 by Kunpei Sakai Fix: fixed ReDoS for Rack::Protection::IPSpoofing....

dependabot[bot]

GSE145157 for CHIP-ATLAS

3

Dear Team, Thank you for developing the ChIP-Atlas. It provides a user-friendly system for fast visualizing of the results. Recently, I'm looking for the hypoxia TF in the Peak Browser....

MonicaLiao1227

Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.6 to 1.13.9. Release notes Sourced from nokogiri's releases. 1.13.9 / 2022-10-18 Security [CRuby] Vendored libxml2 is updated to address CVE-2022-2309, CVE-2022-40304, and CVE-2022-40303. See GHSA-2qc6-mcvw-92cw for...

dependabot[bot]

cannot download bed files for dm6 genome

4

Hi, I am trying to download embryonic ATACseq bedgraph data from the dm6 genome. I keep getting an error as resource unavailable. Could you point me to the right direction...

jdmontenegro

Unable to view different chip-seq or ATAC-seq data in IGV after selecting a particular study

3

I'm trying to analyse different studies through Chip-Atlas Peak browser and trying to analyse different studies in IGV but unable to open them after selecting a particular study. Attached below...

Satyam2595

backend server not working lately

7

Hi there, I have been having problems redoing this enrichment analysis. First run with cellClass defined as Neural, no problem. recently, I reran the same analysis, no results yielded for...

FanBioinformatics

Retrieval of md5 IDs for files available on website.

1

Dear ChIP-atlas team, I am interested in the retrieval of md5sum IDs for website available files. This is relevant for tracking files in case of future changes to those files....

ilibarra

getting reads counts from bigWig file.

2

Dear ChIP-atlas team, Thank you for the dev and maintenance of this fantastic resource. I was wondering if more details can be given regarding the bigWig files provided e.g. for...

ilibarra

GSE37589 for CHIP-ATLAS

1

Dear Team, It looks GSE37589 is not included by the database. Is there any reason it is excluded? Sequencing data has been deposited to the National Center for Biotechnology Information...

Shicheng-Guo