intermine
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intermine
A powerful open source data warehouse system
JUnit 5 came out in 2017, we should upgrade. We shouldn't be using JUnit 3 (2007?) at all. JUnit 5 is backwards compatible so should be okay to do, but...
this end point should work also with a 'give me all the features available' parameter (to avoid listing them in the request). Requested by Jalview.
FlyBase have changed the format of the data: /local-homes/rachel/shared_data/flybase/alleles/ We need to also look at how we model this data.
Wrong tags displaued in the List->View page for bags with the same name belonging to different users
User1 creates a list with tag1. User2 creates a list with the same name. In the List->View page of the user2, the list will be displayed with the tag1. Solution:...
We should be more specific with the SO terms we populate from the ncbi gff file. For example, if the data type is snRNA, then snRNA should be the SO...
I submitted a pull request to deal with an error in the trigger script creation task. I did not realize that converting a float to int does a rounding operation...
The property branding.images.logo contains an absolute path (eg. http://www.flymine.org/flymine/model/images/logo.png) When flymine moved to https schema we forgot to update that url. Maybe we should replace programmability the schema set in...
Instead of hard coding in the web.properties file the auth, token and identity-resource endpoints, use .well-known/openid-configuration endpoint which returns all the endpoints in a standard format.
 This list shows up in the lists tab correctly, but is not in the list of lists in mymine. Maybe that's on purpose?