Xiuwen Zheng

Removing VCF lines without variants (those lines without the GT field) would be a good way before importing to GDS. Another possible issue is the ploidy. From your data, it...

Not sure how you define gVCF, but the gVCF files I received and processed did have GT for every position (even for the site without variant). Another option might be...

Could you please show me `sessionInfo()`?

The latest commit should fix this issue: https://github.com/zhengxwen/SeqArray/commit/16bba1eba7e4935f13c72026974e9c12720aa23a Install SeqArray_1.44.0 from Bioconductor or install from GitHub. Best, Xiuwen

The error is: ``` /usr/bin/ld: final link failed: memory exhausted ``` I am afraid that no much I can help.

Negating `-g` in `~/.R/Makevars` can avoid the problem `/usr/bin/ld: final link failed: memory exhausted`.

**gdsfmt_1.29.1 (devel)** and **gdsfmt_1.28.1 (release)** could avoid the problem `/usr/bin/ld: final link failed: memory exhausted`. Please install these versions if you are not sure 'negating -g'.

>>> Hi there. Im using gdsfmt for horses, whcih has 31 autosomes I created GDS file with snpgdsBED2GDS but I'm not able to change autosomal, X and Y number in...

``` library(gdsfmt) f

Not sure what happened. If you used `module` to load different C++ compiler, please contact with the system maintainer.