Kevin Wu

The original authors note that Lion likely doesn't show significant gains over AdamW under the small batch (

Hi Yam - this shouldn't be happening. Can you pleas share the exact command you used (no need to share the files if you aren't comfortable doing that) and the...

While it is technically possible, the wildcard would simply become an "unknown" token and wouldn't carry any intrinsic meaning.

Did you run the pip install command?

There are many assertion checks in the codebase, can you be more specific about exactly what error you are seeing?

The script you're calling expects that ProteinMPNN is installed under `~/software/ProteinMPNN/`; if that is not the case it will error out. Is that what might be causing the issue here?

Hi, we don't currently officially support inpainting - the partial_noise_reconstruct.py script is largely experimental dev code.

I don't think there's anything that would cause it to fail with fewer structures. The only thing that comes to mind is that we filter out structures with too few...