intro-to-deepcell

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I am a PhD student, working at I.R.C.M (Institut Recherche en Cancérologie de Montpellier -- Montpellier, France), team "Cancer Bioinformatics and Systems Biology". When I try to download "TissueNet" or...

J-P-Borg

Segmentation Prediction Type in online version does not have equivalent notebook application

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I can't find the notebook ipynb application that is equivalent to DeepCell Predict, for Prediction Type Segmentation. I used DeepCell Predict online with these settings: This yielded a good segmentation...

joshuagohos

section Section 3: Foreground Detection¶ in preprocessing notebook is broken

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antonkulaga

Git introduction should fork the repository

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Users cannot push to the project if they are not members of the vanvalenlab organization. Instead, they should fork their own repository and make commits to the forked repo. This...

willgraf

Add a section to the readme with a description of how to upload zip files with multiple images

ngreenwald

Include in the README: - [ ] How to clone the project - [ ] All dependencies needed to clone the project - [ ] maybe a virtual environment for...

willgraf

Under contrast adjustment, you're talking about a child and a lattice, and neither is in the image above.

aditin14

This material is not actively maintained - for up-to-date information on the latest open-source tools for spatial biology, please refer to the repositories and/or documentation for the projects themselves, e.g....

rossbar