pathogen topic
pathongs
Pathogen NGS Documentary
PHAT
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
tiptoft
Predict plasmids from uncorrected long read data
darkest-space
Minimal colorscheme for vim.
assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
Bio-Tradis
A set of tools to analyse the output from TraDIS analyses
gff3toembl
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
iva
de novo virus assembler of Illumina paired reads
mlst_check
Multilocus sequence typing by blast using the schemes from PubMLST
plasmidtron
Assembling the cause of phenotypes and genotypes from NGS data