multiple-sequence-alignment topic

List multiple-sequence-alignment repositories

SPOT-RNA2

24
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7
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Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning

Sequoya

17
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3
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Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics

Revisiting-PLMs

57
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10
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Exploring Evolution-aware & free protein language models as protein function predictors

alignmentviewer

25
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6
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Multiple sequence alignment visualizer

pytrimal

16
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2
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Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!

pyMSAviz

70
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10
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MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

pyfamsa

21
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3
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Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

pymuscle5

17
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2
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Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.

evodiff

486
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70
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Generation of protein sequences and evolutionary alignments via discrete diffusion models