multiple-sequence-alignment topic
SPOT-RNA2
Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning
Sequoya
Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics
Revisiting-PLMs
Exploring Evolution-aware & free protein language models as protein function predictors
alignmentviewer
Multiple sequence alignment visualizer
pytrimal
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
pyMSAviz
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
pyfamsa
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
pymuscle5
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
evodiff
Generation of protein sequences and evolutionary alignments via discrete diffusion models
react-msa-viewer
React rerelease of MSAViewer