microscopy topic
pycroscopy
Scientific analysis of nanoscale materials imaging data
axondeepseg
Axon/Myelin segmentation using Deep Learning
deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for...
pathml
Tools for computational pathology
relion
Image-processing software for cryo-electron microscopy
aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
cellfinder
Automated 3D cell detection in very large images
pytorch_connectomics
PyTorch Connectomics: segmentation toolbox for EM connectomics
cucim
cuCIM - RAPIDS GPU-accelerated image processing library
cloud-volume
Read and write Neuroglancer datasets programmatically.