biomedical-data-science topic
opa2vec
Turning Ontologies Plus Annotation Properties into Vectors
pyssam
A Python library for biomedical statistical shape and appearance modelling.
enrichment_analysis
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
dea_limma
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
EHRtemporalVariability
R package for delineating temporal dataset shifts in Eletronic Health Records
verifAI
VerifAI project is NGI Search funded initiative to build open-source biomedical generative question-answering engine with referenced and verifiable answers (using posteriori model)