Bioinformatics topic
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
BuddySuite
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
bamtocov
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
covtobed
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
graph-network-explainability
Explainability techniques for Graph Networks, applied to a synthetic dataset and an organic chemistry task. Code for the workshop paper "Explainability Techniques for Graph Convolutional Networks" (IC...
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
deep-rules
Ten Quick Tips for Deep Learning in Biology
atropos
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
fastqp
Simple FASTQ quality assessment using Python
bioinformatics-hacks
Scripts for miscelleneous bioinformatics tasks
slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity