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Published 20 hours ago • verified publisher icon t-neumann

Is slamdunk suitable for single cell SLAM-seq analysis

Open pigraul opened this issue 5 years ago • 1 comments

Hi Tobias,

Is slamdunk suitable for single cell SLAM-seq analysis ?

Thank you

pigraul avatar May 27 '20 02:05 pigraul

Hi @pigraul

also sorry for the late reply, I was on holiday.

So in principal, slamdunk should also be able to map single-cell SLAM-seq reads, but it does not provide any demultiplexing option, so you would need to separate the read sets into your bins on your own before mapping them.

t-neumann avatar Jun 02 '20 09:06 t-neumann