slamdunk

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Hi Tobias:

I believe tcount files are recalculated even if tcount files exist and the /map, /filter and /snp files are older than the previous tcount files. I thought it is an issue because in contrast the /map, /filter, and /snp files are not updated when the input files have not changed. Let me know if I'm mistaken however.

Thanks!

Well actually we're not even doing any date created timestamp comparison but only check if files exist to avoid recalculation of map, filter, snp files. So this is not very well designed at the moment I admit. I will put it on the to do list.