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ColabFold protocol

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Four data files were generated after CPPTRAJ analysis: evecs.dat (Evecs file): myEvecs %eigenvec.dat (Standard Data File): XEVAL_00007[Frac] XEVAL_00007[Cumulative] XEVAL_00007[Eigenval] project.dat (Standard Data File): Mode1 Mode2 Mode3 helices.nmd (NMwiz output) How...

For procedure 6 (local run to generate alternative conformations), can we use --num-seeds of 16 instead of the random seeds (0,...., 16)? On ColabFold webpage, num-seeds is recommended to use,...