Long-Read-Proteogenomics

Long-Read-Proteogenomics copied to clipboard

Error with demo data in 'mass_spec_raw_convert'

2

Dear developers, Thank you for this great tool. I just installed it and tried to run the pipeline with the test_without_sqanti.config but it crashes with the following error: ``` Error...

almart7

I would like to use metamorpheus + rescue and resolve, so I'm having a look at main_metamorpheus.nf to try to run it. Some questions: 1 - can't find the toml...

rsalz

## Description Implements methods to make it easier to run the LRP pipeline on singularity via a proteowizard sandbox. Changes: 1. Enable `--writable-tmpfs` for wine (#165) 2. Use a proteowizard...

dnwissel

Hi, this may just be me (since our cluster is fairly restrictive), but I had to add the `--writable-tmpfs` container option for all containers relating to either wine or Metamorpheus....

dnwissel

Adds tutorials shared in Slack in GutHub for longevity

2

I am self-assigning me for most tutorials shared in Slack in GutHub for longevity, happy to share the tutorials write up if someone offers to contribute as well. Tutorials that...

cgpu

In many cases, the scripts (modules) expect specific naming patterns that are not well documented. In many cases particular modules expect data to be formatted with particular column names which...

Sktbanerjee1

To facilitate understanding of each of the modules, add a shell script that illustrates how this is done in the same manner as was done in the generate_reference_tables module. Modules...

adeslatt

I do not believe that the `uniprot_fasta` is a valid parameter anymore. I do not find its use in `main.nf`. May I remove @bj8th

adeslatt

We document pipeline in the Wiki and we are using cDNA_cupcake repository as a model. This model uses the README.md to describe the repository and point the user to the...

adeslatt

Hello, In your paper you present the SQANTI structural categories for proteins where you list and describe 4 main categories: pFSM, pISM, pNIC, pNNC. However after running your tool we...

pclavell