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Published 20 hours ago • verified publisher icon scverse

Implement zarr backend

Open LouiseDck opened this issue 2 years ago • 7 comments
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LouiseDck avatar Sep 15 '23 13:09 LouiseDck

I think this will be blocked on R zarr libraries. AFAICT there isn't enough support in either pizzarr or rarr, as neither has string support last I checked.

ivirshup avatar Sep 18 '23 07:09 ivirshup

I implemented the VLen-UTF8 support yesterday https://github.com/keller-mark/pizzarr/pull/55 - Example with a remote anndata-zarr store here https://keller-mark.github.io/pizzarr/articles/remote-anndata.html - feel free to report any issues if you end up trying it out

keller-mark avatar Sep 19 '23 14:09 keller-mark

I have a preliminary implementation working on this branch (compare). Some of the functions emit warnings at the moment but most of the reading/writing tests are passing, as well as tests that compare values between h5ad and zarr

keller-mark avatar May 08 '24 14:05 keller-mark