python-libsbml
python-libsbml copied to clipboard
sbmlteam
Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
The build should allow to be configured to work with multiple CPUs. There are ```-parallel []``` and ```-j []``` cmake arguments. I've added this patch to the FreeBSD port as...
The `python-libsbml` [conda package](https://anaconda.org/conda-forge/python-libsbml) currently does not support `osx-arm64` architecture (only `osx-64`). However, it is supported by the [pypi package](https://pypi.org/project/python-libsbml/). It would be nice to enable this also for conda.
I'd like to specify a Python environment where python-libsbml-experimental is required, and required to be equal to the version of python-libsbml (whose version would be determined by the requirements of...
we've been made aware that `setup.py install --record plist.txt` is incomplete and missing the following files: %%PYTHON_SITELIBDIR%%/libsbml/__init__.py %%PYTHON_SITELIBDIR%%/libsbml/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/libsbml/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc not yet sure how to solve this, so filing it here...
A user reported the following issue with AMICI: https://github.com/AMICI-dev/AMICI/issues/1483 What ends up happening is that `sbml_model.all_elements` has type `libcombine.SBaseList` instead of the usual `libsbml.ListWrapperSBase`. I can reproduce that this always...
This is not the kind of behaviour that is expected from a getter; is it returning the original and keeping a copy? Somehow the memory handling is not working correctly...
In cobrapy we obviously use python-libsbml quite a bit and when running our test suite with pytest we get thousands of deprecation warnings coming from libsbml. For anyone else coming...
Hi, I have some issue with the current Python 3.13 PyPI wheel (`python_libsbml-5.20.4-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl`): When I call `libsbml.Model.getListOfAllElements()`, I only get a sequence of `SBase` instances: ```python import libsbml doc =...
Importing the current manylinux Python 3.11 wheel (`python_libsbml-5.20.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl`) with Python 3.11.11 on Ubuntu with `-Werror` (common under `pytest`) results in a segfault. After creating a new virtual environment with Python...