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Example client programs for Saphetor's VarSome annotation API

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Hi there It would be really nice if you can create a VERSION file and some certain of LOGCHANGE in order to keep a track of all the changes that...

``` from varsome_api.client import VarSomeAPIClient api_key = 'Your token' api = VarSomeAPIClient(api_key, api_url="https://stable-api.varsome.com") result = api.lookup('chr7-140453136-A-T',params={'add-source-databases':'gnomad-exomes,refseq-transcripts'},ref_genome='hg19') ``` --------------------------------------------------------------------------- HTTPError Traceback (most recent call last) File ~/.local/lib/python3.8/site-packages/varsome_api/client.py:104, in VarSomeAPIClientBase._make_request(self, path, method,...

I wanted to find the HGVS for the ACMG block returned by the API. In order to grab that from the refseq_transcripts or ensembl_transcripts block, I needed the ACMG block's...

Running PyVCF-0.6.8/setup.py -q bdist_egg --dist-dir /tmp/easy_install-g03wy5kq/PyVCF-0.6.8/egg-dist-tmp-dtk0mpp9 error: Setup script exited with error in PyVCF setup command: use_2to3 is invalid. Current workaround: https://github.com/jamescasbon/PyVCF/pull/331#issuecomment-923954814 Or switching to the faster and maintained cyvcf2

[passing argv to main()](https://github.com/saphetor/variant-api-client-python/blob/075aab69b02bbcd0fdc7320749d3f1c431df57e6/run.py#L65) is not necessary, since argparse [implements sys.argv directly](https://github.com/python/cpython/blob/78e43a59acd2c5c2325e52f37ddd59d2079391ee/Lib/argparse.py#L1736)