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Published 20 hours ago • verified publisher icon sandbox-bio

Multiple sequence alignment and clustering with MMSeqs2, Foldseek

Open robertaboukhalil opened this issue 2 years ago • 0 comments

  • https://github.com/soedinglab/MMseqs2/wiki/Tutorials#metagenomic-pathogen-detection
  • During tests, had to set RAM to 2GB to run a simple mmseqs easy-search examples/QUERY.10.fasta examples/DB.1000.fasta alnRes.m8 tmp and foldseek easy-search example/d1asha_ example/ aln tmpFolder, so might need lots of subsampling to have this working on less RAM.

robertaboukhalil avatar Sep 18 '23 21:09 robertaboukhalil