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Evidence of translocation in samples

Open markutz556 opened this issue 4 years ago • 1 comments

Hi!

Thanks for developing this wonderful package!

I have visualized this result for one of our data and we are trying to find the evidence of translocation. I know that we should see a bar in the top center of the plot to say the sample contains translocation but I wonder if the attached samplot shows evidence for the translocation (the dotted line close to insert size 0). If no, what does this line indicate? Thanks!

Mike

Screen Shot 2021-08-25 at 21 54 30

markutz556 avatar Aug 26 '21 04:08 markutz556

It looks promising. Can you play with the zoom a bit to get rid of those two pairs with huge insert sizes?

On Wed, Aug 25, 2021 at 10:53 PM markutz556 @.***> wrote:

Hi!

Thanks for developing this wonderful package!

I have visualized this result for one of our data and we are trying to find the evidence of translocation. I know that we should see a bar in the top center of the plot to say the sample contains translocation but I wonder if the attached samplot shows evidence for the translocation (the dotted line close to insert size 0). If no, what does this line indicate? Thanks!

Mike

[image: Screen Shot 2021-08-25 at 21 54 30] https://user-images.githubusercontent.com/32141391/130902843-76864c1c-6b90-4fc0-aae4-b81d578e7575.png

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ryanlayer avatar Aug 26 '21 16:08 ryanlayer