What_the_Phage
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WtP: Phage identification via nextflow and docker or singularity
Hello, author! My ubantu system uses docker to install Wtp v1 1.0. After installing the database (nextflow run replication / what_the_ph - R V1.1.0 -- setup - profile local, docker),...
Hellow! I have successfully run wtp using example data on my computer, while the calculation of my own sample seems not finish completely. Here is the wtp report and the...
Hi, I just got this error with 2 different run and I wonder if there is anything to correct this. Here is the error: NOTE: Process `virsorter2_wf:virsorter2 (1)` terminated with...
Hi, I ran this. `nextflow run replikation/What_the_Phage -r v1.0.3 --no-check-certificate --cachedir ./singularity_images/ --setup -profile local,singularity --workdir ./work --databases ./nextflow-autodownload-databases/` and I got the following output ``` N E X T...
Hi, Does the nextflow process execution timeline continue to update through the entire wtp run (i.e. should all finished processes be showing up in the timeline as they're completed)? Along...
# List of Tools ## Implement? * [VirMiner(Mining, analyzing, and integrating viral signals from metagenomic data)](https://github.com/TingtZHENG/VirMiner/) * [Paper](https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0657-y) + [ ] Docker file created * [VirMine (viral sequences from metagenomes)](https://github.com/thatzopoulos/virMine)...
This might be another interesting tool to add * https://github.com/KennthShang/PhaMer * http://arxiv.org/abs/2201.04778
Dear all, I recommend adding `envWhitelist = 'SINGULARITY_LOCALCACHEDIR'` in the `nextflow.config` to make the env `SINGULARITY_LOCALCACHEDIR` usable in nextflow. This env could designate the location to which singularity images extract....
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WtP: Phage identification via nextflow and docker or singularity