vclust

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K-mer and ANI computation between multi-contigs bins

1

Hi thanks for the great tool. I am trying to calculate ANI between multi-contigs bins, where each viral bin consists of multiple contigs. However, length estimate is different from the...

HanJune-Kim

[feature request] AAI calculation

1

Thanks for the amazing tool! The viral DNA code is very dynamic and has no repair mechanisms, therefore viruses quickly mutate. However, they should be conserved on the aminoacid level,...

valentynbez

Allow bidirectional coverage filtering

1

When dereplicating sequences, it is crucial to cluster genomes that significantly overlap each other (i.e., high bidirectional coverage) to avoid clustering sequences where one is entirely contained within the other....

apcamargo

It would be great to have vClust as a package in Bioconda to make installation easier. Ideally the recipe would be built from a PyPI release, which requires a proper...

apcamargo

Thank you for developing such a convenient and powerful tool! I'm wondering why vclust emphasizes clustering viral sequences—can I use it for dereplicating bacterial sequences? Is it because viral sequences...

inspirewind

Compute Fasta v Fasta ANI as opposed to all-v-all

2

Thanks for the great tool! Currently, vClust only allows users to compute all-v-all ANI. While this is very useful for clustering, there are also instances where this is not necessary...

CarsonJM