cobratoolbox
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opencobra
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Fixed some bugs - file reading in DEMETER that vcauses the file to read wrong with certain model names - exchange reaction formulated wrong in DEMETER - plot in mgPipe...
update overlap maps to symmetric maps: (A ∪ B)/ (A ∩ B) **I hereby confirm that I have:** - [X] Tested my code on my own machine - [ ]...
*Please include a short description of enhancement here* **I hereby confirm that I have:** - [ ] Tested my code on my own machine - [ ] Followed the guidelines...
Error using optimizeCardinality mosek not working with optCard -TODO debug with testOptimizeCbModel Error in minCardinalityConservationRelaxationVector (line 112) solutionRelax = optimizeCardinality(cardProblem,param); Error in findStoichConsistentSubset (line 324) [relaxRxnBool,solutionRelax] = minCardinalityConservationRelaxationVector(model.S(boolMet,boolRxn),minCardRelaxParams,printLevel-1); Error in...
- Added some options in statistical analysis in mgPipe - Added file with metabolite names ot be exported in mgPipe - Fixed some bugs - Added option to create an...
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*Please include a short description of enhancement here* **I hereby confirm that I have:** - [ ] Tested my code on my own machine - [ ] Followed the guidelines...
I created a .json from a .mat file (Recon3D): writeCbModel(humanRecon, 'Recon3DVMH.json', 'format', 'json'); The resulting file does not seem to be compatible with Escher. When doing the conversion from .mat...
Dear COBRA Toolbox Team, I hope this message finds you well. I am currently working on integrating genome-scale metabolic models (GEMs) of an oleaginous fungus generated from two automated pipelines:...
