cobratoolbox

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• minor changes to Microbiome Modeling Toolbox to avoid bugs regarding diet
• changed the name of the runPipeline function in Demeter to avoid problems

I hereby confirm that I have:

• x Tested my code on my own machine
• x Followed the guidelines in the Contributing Guide
• x Selected develop as a target branch (top left drop-down menu)

(Note: You may replace [ ] with [X] to check the box)