uberon
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obophenotype
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
Taxon constraints are not present in all files. For instance, there is no "only_in_taxon" relations in ext.obo, but they are present in ext.owl. Also, I noticed some variations in the...
The following GCI relations seem incorrect, and generate cycles: ``` [Term] id: UBERON:0000074 name: renal glomerulus is_a: UBERON:0005325 {gci_filler="NCBITaxon:7954", gci_relation="part_of"} ! mesonephric glomerulus [Term] id: UBERON:0000045 name: ganglion is_a: UBERON:0003338...
Currently the use of part_of and overlaps have some conventions, but they aren't documented well. see https://github.com/oborel/obo-relations/issues/564#issuecomment-1021468745 for more details
hormion
**Preferred term label:** hormion **Synonyms** vomerine notch **Definition (free text, please give PubMed ID)** aboral border of the vomer bone along the median plane, where the vomer bone and sphenoid...
Related to #2420, in FoodOn say we want to talk about a cow heart. So far we've been saying: `'cow heart': equivalentTo heart and ('derives from' some 'Bos taurus' and...
**Uberon term** UBERON:0014892 skeletal muscle organ UBERON:0014895 somatic muscle **Suggested revision and reasons** UBERON:0014892 skeletal muscle organ 'only in taxon' some Eumetazoa Definition: "A muscle organ that consists of skeletal...
Can you write a SPARQL update query that matches all oboInOwl properties w/o datatype string and then inserts the datatype?
Currently Fish cannot have a neck because of taxon constraints @cmungall commented (https://github.com/obophenotype/uberon/issues/2367#issuecomment-1096815312): "I think the best solution would be to generalize neck in a way that keeps the fish...
**Preferred term label:** "teat skin" from cow. **Synonyms** **Definition (free text, please give PubMed ID)** In figure 1.1. [publication](https://www.semanticscholar.org/paper/The-bovine-teat-canal%3A-Its-role-in-pathogen-and-of-Smolenski/c85c749158d33d751e115cf920f6e56e635212be) **Parent term (use https://www.ebi.ac.uk/ols/ontologies/uberon)** [skin epidermis](http://purl.obolibrary.org/obo/UBERON_0001003) ? **Your nano-attribution (ORCID)** 0000-0001-7361-4159
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An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology