nf-core
nf-core
clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
dualrnaseq
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
metaboigniter
Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
readsimulator
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
viralintegration
Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.
exoseq
Please consider using/contributing to https://github.com/nf-core/sarek
genomeannotator
Pipeline for the identification of (coding) gene structures in draft genomes.
oncoanalyser
A comprehensive cancer DNA/RNA analysis and reporting pipeline
nascent
Nascent Transcription Processing Pipeline
metatdenovo
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.