metaboigniter
metaboigniter copied to clipboard
nf-core
Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
### Description of the bug If the input MSMS files are not indexed mzML the workflow fails at the parameter generation. We need to make sure that the files are...
We need to clarify that the missing values are represented as zero. https://github.com/nf-core/metaboigniter/blob/2f8f077d38fcacd2caef9590dc557ddcc17c78c6/docs/output.md?plain=1#L25C4-L25C4
Version `3.0.2` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...
### Description of feature Hi, is it possible to setup a local library MGF file for annotation? thanks
Version `3.2.1` of [nf-core/tools](https://github.com/nf-core/tools) has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline. Please make sure to...
- [ ] Fork the pipeline to your user account, if you have not done so before (Make sure you deselect `Copy the master branch only`) - [ ] Go...
### Description of the bug It appears PYOPENMS_MSMAPPING takes significantly longer time to finish, so the pipeline killed due to timeout frequently (My data is 3 condition* 6 replicates, 400MB...
