starjs

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StarJS lacks documentation, source comments are not enough. You can describe all the methods in the GitHub wiki for example.

Also some examples would be helpful.

That's true, but meantime 'Astronomy on the Personal Computer' can be used as guide, as API is quite similar.

I planned to use JavaDoc-like documentation, but still don't know good tool for it.

In my experience, doc generation tools just suck. They're just too limited and you don't get a very usable and readable documentation as an output. Wiki, Markdown or plain HTML is MUCH better.