rna-tools

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   2 of chains: A  
    1 of RNA chains: A
    wrong atom order in residue of chain A resid 1 P O5'
    wrong atom order in residue of chain A resid 1 OP1 C5'
    wrong atom order in residue of chain A resid 1 OP2 C4'
    wrong atom order in residue of chain A resid 1 O5' O4'
    wrong atom order in residue of chain A resid 1 C5' C3'
    wrong atom order in residue of chain A resid 1 C4' O3'
    wrong atom order in residue of chain A resid 1 O4' C2'
    wrong atom order in residue of chain A resid 1 C3' O2'
    wrong atom order in residue of chain A resid 1 O3' C1'
    wrong atom order in residue of chain A resid 1 C2' N9
    wrong atom order in residue of chain A resid 1 O2' C8
    wrong atom order in residue of chain A resid 1 C1' N7
    wrong atom order in residue of chain A resid 1 N9 C5
    wrong atom order in residue of chain A resid 1 C8 C6
    wrong atom order in residue of chain A resid 1 N7 O6
    wrong atom order in residue of chain A resid 1 C5 N1
    wrong atom order in residue of chain A resid 1 C6 C2
    wrong atom order in residue of chain A resid 1 O6 N2
    wrong atom order in residue of chain A resid 1 N1 N3
    wrong atom order in residue of chain A resid 1 C2 C4

inspect of PyMOL runs

rna_pdb_tools.py —inspect

and there is also:

(base) ➜ notes git:(master) ✗ rna_pdb_inspect.py usage: rna_pdb_inspect.py [-h] [-v] file [file ...] rna_pdb_inspect.py: error: the following arguments are required: file

merge it