Michael Hall
Michael Hall
rasusa
Randomly subsample sequencing reads
pafpy
A lightweight library for working with PAF (Pairwise mApping Format) files
ssubmit
Submit slurm sbatch jobs without a script
taeper
A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
compression_benchmark
Benchmarking fastq compression with generic (mature) compression algorithms
psdm
Compute a pairwise SNP distance matrix from one or two alignment(s)
drprg
Drug Resistance Prediction with Reference Graphs
skc
Shared k-mer content between two genomes
ontime
Extract subsets of ONT (Nanopore) reads based on time
container_recipes
Repository with all my container recipes 👩🍳