Nico Matentzoglu
Nico Matentzoglu
@ChristianKleineidam Please feel free to reopen, sorry about that - we have to do some prioritisation work now, as work on Uberon is resuming! :) Thanks for responding.
In practice, we do now import other ontologies and classify our ontologies with them. I think this is a good step forward; I would suggest a slightly reduced proposal here:...
Base docs are here: https://oboacademy.github.io/obook/reference/base-specification/?h=base
For an executive summary this is correct! Note that there is a fairly complex way to distinguish sentences about a term and sentences mentioning a term. For example MY:123 subclass...
> I would have expected ‘nucleus organization phenotype’ (currently only under 'organelle organization phenotype' UPHENO:0049700) to be an additional child of ‘nucleus phenotype’ UPHENO:0082548 (def: changed nucleus) but it is...
@anna-anagnostop I fixed some issues in the latest release: https://github.com/obophenotype/upheno-dev/releases/tag/2025-01-11 can you look at upheno.owl in Protege and confirm you are satisfied? I would also ask you if possible to...
Yeah, good idea. I would personally prefer axiom annotations over term annotations (because this hides them a bit better), but I can see that probably the discussions won't be limited...
Yeah on second thought, I think I would agree. Maybe it should be a more first class citizen, sitting directly on the term.
@ptgolden would you be willing to make a PR? THANKS!
If you could add a test, I will do my best to review it for potential pitfalls!