jupyterlab-latex
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jupyterlab
Server Extension Error when generating LaTeX preview in Docker (jupyterlab/scipy-notebook)
Description
I can't generate LaTeX previews, I get the error:
Server Extension Error
You probably do not have jupyterlab_latex installed or enabled. Please, run "pip install -U jupyterlab_latex." If that does not work, try "jupyter serverextension enable --sys-prefix jupyterlab_latex".
Error from docker log:
jupyter_lab | [W 2022-11-03 13:00:01.746 ServerApp] 404 GET /latex/build/work/templates/individual_report.tex?synctex=1&1667480400348 (172.16.10.2) 1.49ms referer=https://docker:8888/lab/tree/work/templates/individual_report.tex
jupyter_lab | [W 2022-11-03 13:00:01.789 ServerApp] 404 GET /api/contents/work/templates/individual_report.pdf?type=file&content=1&format=base64&1667480400363 (172.16.10.2): file or directory does not exist: 'work/templates/individual_report.pdf'
Because this is the scipy-notebook docker image, it has latex. I also have installed the extension through jupyterlab itself.
My docker-compose.yml file is:
~/docker > cat docker-compose.yaml py base root@docker
version: '3'
services:
datascience-notebook:
image: jupyter/scipy-notebook
container_name: jupyter_lab
restart: unless-stopped
volumes:
- /root/jupyter:/home/jovyan/work
ports:
- 8888:8888
environment:
#- JUPYTER_ENABLE_LAB=yes
- DOCKER_STACKS_JUPYTER_CMD=lab
- GEN_CERT=yes
- RESTARTABLE=yes
command: "start-notebook.sh \
--ServerApp.password=sha1:blablabla"
Reproduce
- Use docker image above
- Install jupyterlab/latex plugin through jupyterlab
- Create an empty tex file
- Right click on file and select "Show LaTeX Preview"
Expected behavior
I expect a pdf to be generated
Context
- Operating System and version: Ubuntu 20.04.5 LTS
- Browser and version: Firefox 106.0.3
- JupyterLab version: Version 3.5.0
Troubleshoot Output
$PATH:
/opt/conda/bin
/opt/conda/condabin
/opt/conda/bin
/usr/local/sbin
/usr/local/bin
/usr/sbin
/usr/bin
/sbin
/bin
sys.path:
/opt/conda/bin
/opt/conda/lib/python310.zip
/opt/conda/lib/python3.10
/opt/conda/lib/python3.10/lib-dynload
/opt/conda/lib/python3.10/site-packages
sys.executable:
/opt/conda/bin/python
sys.version:
3.10.6 | packaged by conda-forge | (main, Aug 22 2022, 20:35:26) [GCC 10.4.0]
platform.platform():
Linux-5.15.39-3-pve-x86_64-with-glibc2.35
which -a jupyter:
/opt/conda/bin/jupyter
/opt/conda/bin/jupyter
pip list:
Package Version
----------------------------- -----------
alembic 1.8.1
altair 4.2.0
anyio 3.6.2
argon2-cffi 21.3.0
argon2-cffi-bindings 21.2.0
asttokens 2.0.8
async-generator 1.10
attrs 22.1.0
Babel 2.10.3
backcall 0.2.0
backports.functools-lru-cache 1.6.4
beautifulsoup4 4.11.1
bleach 5.0.1
blinker 1.5
bokeh 2.4.3
Bottleneck 1.3.5
brotlipy 0.7.0
cached-property 1.5.2
certifi 2022.9.24
certipy 0.1.3
cffi 1.15.1
charset-normalizer 2.1.1
click 8.1.3
cloudpickle 2.2.0
colorama 0.4.6
conda 22.9.0
conda-package-handling 1.9.0
contourpy 1.0.6
cryptography 38.0.2
cycler 0.11.0
Cython 0.29.32
cytoolz 0.12.0
dask 2022.10.0
debugpy 1.6.3
decorator 5.1.1
defusedxml 0.7.1
dill 0.3.6
distributed 2022.10.0
entrypoints 0.4
et-xmlfile 1.0.1
executing 1.1.1
fastjsonschema 2.16.2
flit_core 3.7.1
fonttools 4.38.0
fsspec 2022.10.0
gmpy2 2.1.2
greenlet 1.1.3.post0
h5py 3.7.0
HeapDict 1.0.1
idna 3.4
imagecodecs 2022.9.26
imageio 2.22.0
importlib-metadata 5.0.0
importlib-resources 5.10.0
ipykernel 6.17.0
ipympl 0.9.2
ipython 8.6.0
ipython-genutils 0.2.0
ipywidgets 8.0.2
jedi 0.18.1
Jinja2 3.1.2
joblib 1.2.0
json5 0.9.5
jsonschema 4.16.0
jupyter-client 7.3.4
jupyter_core 4.11.1
jupyter-server 1.21.0
jupyter-telemetry 0.1.0
jupyterhub 3.0.0
jupyterlab 3.5.0
jupyterlab-pygments 0.2.2
jupyterlab_server 2.16.2
jupyterlab-widgets 3.0.3
kiwisolver 1.4.4
libmambapy 0.27.0
llvmlite 0.39.1
locket 1.0.0
lz4 4.0.2
Mako 1.2.3
mamba 0.27.0
MarkupSafe 2.1.1
matplotlib 3.6.1
matplotlib-inline 0.1.6
mistune 2.0.4
mpmath 1.2.1
msgpack 1.0.4
munkres 1.1.4
nbclassic 0.4.5
nbclient 0.7.0
nbconvert 7.2.3
nbformat 5.7.0
nest-asyncio 1.5.6
networkx 2.8.7
notebook 6.5.1
notebook_shim 0.2.0
numba 0.56.3
numexpr 2.8.3
numpy 1.23.4
oauthlib 3.2.2
openpyxl 3.0.10
packaging 21.3
pamela 1.0.0
pandas 1.5.1
pandocfilters 1.5.0
parso 0.8.3
partd 1.3.0
patsy 0.5.3
pexpect 4.8.0
pickleshare 0.7.5
Pillow 9.2.0
pip 22.3
pkgutil_resolve_name 1.3.10
prometheus-client 0.15.0
prompt-toolkit 3.0.31
protobuf 4.21.9
psutil 5.9.3
ptyprocess 0.7.0
pure-eval 0.2.2
pycosat 0.6.4
pycparser 2.21
pycurl 7.45.1
Pygments 2.13.0
PyJWT 2.6.0
pyOpenSSL 22.1.0
pyparsing 3.0.9
pyrsistent 0.18.1
PySocks 1.7.1
python-dateutil 2.8.2
python-json-logger 2.0.1
pytz 2022.5
PyWavelets 1.3.0
PyYAML 6.0
pyzmq 24.0.1
requests 2.28.1
ruamel.yaml 0.17.21
ruamel.yaml.clib 0.2.7
ruamel-yaml-conda 0.15.80
scikit-image 0.19.3
scikit-learn 1.1.3
scipy 1.9.3
seaborn 0.12.0
Send2Trash 1.8.0
setuptools 65.5.0
six 1.16.0
sniffio 1.3.0
sortedcontainers 2.4.0
soupsieve 2.3.2.post1
SQLAlchemy 1.4.42
stack-data 0.5.1
statsmodels 0.13.2
sympy 1.11.1
tables 3.7.0
tblib 1.7.0
terminado 0.17.0
threadpoolctl 3.1.0
tifffile 2022.10.10
tinycss2 1.2.1
tomli 2.0.1
toolz 0.12.0
tornado 6.1
tqdm 4.64.1
traitlets 5.5.0
typing_extensions 4.4.0
unicodedata2 15.0.0
urllib3 1.26.11
wcwidth 0.2.5
webencodings 0.5.1
websocket-client 1.4.1
wheel 0.37.1
widgetsnbextension 4.0.3
xlrd 2.0.1
zict 2.2.0
zipp 3.10.0
conda list:
# packages in environment at /opt/conda:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_kmp_llvm conda-forge
alembic 1.8.1 pyhd8ed1ab_0 conda-forge
altair 4.2.0 pyhd8ed1ab_1 conda-forge
anyio 3.6.2 pyhd8ed1ab_0 conda-forge
aom 3.5.0 h27087fc_0 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py310h5764c6d_3 conda-forge
asttokens 2.0.8 pyhd8ed1ab_0 conda-forge
async_generator 1.10 py_0 conda-forge
attrs 22.1.0 pyh71513ae_1 conda-forge
babel 2.10.3 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.11.1 pyha770c72_0 conda-forge
blas 2.116 openblas conda-forge
blas-devel 3.9.0 16_linux64_openblas conda-forge
bleach 5.0.1 pyhd8ed1ab_0 conda-forge
blinker 1.5 pyhd8ed1ab_0 conda-forge
blosc 1.21.1 h83bc5f7_3 conda-forge
bokeh 2.4.3 pyhd8ed1ab_3 conda-forge
bottleneck 1.3.5 py310hde88566_1 conda-forge
brotli 1.0.9 h166bdaf_8 conda-forge
brotli-bin 1.0.9 h166bdaf_8 conda-forge
brotlipy 0.7.0 py310h5764c6d_1005 conda-forge
brunsli 0.1 h9c3ff4c_0 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
c-blosc2 2.4.3 h7a311fb_0 conda-forge
ca-certificates 2022.9.24 ha878542_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
certifi 2022.9.24 pyhd8ed1ab_0 conda-forge
certipy 0.1.3 py_0 conda-forge
cffi 1.15.1 py310h255011f_2 conda-forge
cfitsio 4.1.0 hd9d235c_0 conda-forge
charls 2.3.4 h9c3ff4c_0 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
click 8.1.3 unix_pyhd8ed1ab_2 conda-forge
cloudpickle 2.2.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
conda 22.9.0 py310hff52083_1 conda-forge
conda-package-handling 1.9.0 py310h5764c6d_1 conda-forge
configurable-http-proxy 4.5.3 he2f69ee_3 conda-forge
contourpy 1.0.6 py310hbf28c38_0 conda-forge
cryptography 38.0.2 py310h597c629_2 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cython 0.29.32 py310hd8f1fbe_1 conda-forge
cytoolz 0.12.0 py310h5764c6d_1 conda-forge
dask 2022.10.0 pyhd8ed1ab_2 conda-forge
dask-core 2022.10.0 pyhd8ed1ab_2 conda-forge
dav1d 1.0.0 h166bdaf_1 conda-forge
debugpy 1.6.3 py310hd8f1fbe_1 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
dill 0.3.6 pyhd8ed1ab_1 conda-forge
distributed 2022.10.0 pyhd8ed1ab_2 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
et_xmlfile 1.0.1 py_1001 conda-forge
executing 1.1.1 pyhd8ed1ab_0 conda-forge
flit-core 3.7.1 pyhd8ed1ab_0 conda-forge
fonttools 4.38.0 py310h5764c6d_1 conda-forge
freetype 2.12.1 hca18f0e_0 conda-forge
fsspec 2022.10.0 pyhd8ed1ab_0 conda-forge
giflib 5.2.1 h36c2ea0_2 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
gmpy2 2.1.2 py310h3ec546c_1 conda-forge
greenlet 1.1.3.post0 py310hd8f1fbe_0 conda-forge
h5py 3.7.0 nompi_py310h416281c_102 conda-forge
hdf5 1.12.2 nompi_h2386368_100 conda-forge
heapdict 1.0.1 py_0 conda-forge
icu 70.1 h27087fc_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
imagecodecs 2022.9.26 py310h90cd304_3 conda-forge
imageio 2.22.0 pyhfa7a67d_0 conda-forge
importlib-metadata 5.0.0 pyha770c72_1 conda-forge
importlib_resources 5.10.0 pyhd8ed1ab_0 conda-forge
ipykernel 6.17.0 pyh210e3f2_0 conda-forge
ipympl 0.9.2 pyhd8ed1ab_0 conda-forge
ipython 8.6.0 pyh41d4057_1 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 8.0.2 pyhd8ed1ab_1 conda-forge
jedi 0.18.1 pyhd8ed1ab_2 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
joblib 1.2.0 pyhd8ed1ab_0 conda-forge
jpeg 9e h166bdaf_2 conda-forge
json5 0.9.5 pyh9f0ad1d_0 conda-forge
jsonschema 4.16.0 pyhd8ed1ab_0 conda-forge
jupyter_client 7.3.4 pyhd8ed1ab_0 conda-forge
jupyter_core 4.11.1 py310hff52083_1 conda-forge
jupyter_server 1.21.0 pyhd8ed1ab_0 conda-forge
jupyter_telemetry 0.1.0 pyhd8ed1ab_1 conda-forge
jupyterhub 3.0.0 pyh2a2186d_1 conda-forge
jupyterhub-base 3.0.0 pyh2a2186d_1 conda-forge
jupyterlab 3.5.0 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_server 2.16.2 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.3 pyhd8ed1ab_0 conda-forge
jxrlib 1.1 h7f98852_2 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.4 py310hbf28c38_1 conda-forge
krb5 1.19.3 h3790be6_0 conda-forge
lcms2 2.13.1 h6ed2654_0 conda-forge
ld_impl_linux-64 2.39 hc81fddc_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libaec 1.0.6 h9c3ff4c_0 conda-forge
libarchive 3.5.2 hb890918_3 conda-forge
libavif 0.11.1 h5cdd6b5_0 conda-forge
libblas 3.9.0 16_linux64_openblas conda-forge
libbrotlicommon 1.0.9 h166bdaf_8 conda-forge
libbrotlidec 1.0.9 h166bdaf_8 conda-forge
libbrotlienc 1.0.9 h166bdaf_8 conda-forge
libcblas 3.9.0 16_linux64_openblas conda-forge
libcurl 7.86.0 h7bff187_0 conda-forge
libdeflate 1.14 h166bdaf_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 12.2.0 h65d4601_19 conda-forge
libgfortran-ng 12.2.0 h69a702a_19 conda-forge
libgfortran5 12.2.0 h337968e_19 conda-forge
libgomp 12.2.0 h65d4601_19 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
liblapack 3.9.0 16_linux64_openblas conda-forge
liblapacke 3.9.0 16_linux64_openblas conda-forge
libllvm11 11.1.0 he0ac6c6_5 conda-forge
libmamba 0.27.0 h0dd8ff0_0 conda-forge
libmambapy 0.27.0 py310hab0e683_0 conda-forge
libnghttp2 1.47.0 hdcd2b5c_1 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge
libpng 1.6.38 h753d276_0 conda-forge
libprotobuf 3.21.9 h6239696_0 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsolv 0.7.22 h6239696_0 conda-forge
libsqlite 3.39.4 h753d276_0 conda-forge
libssh2 1.10.0 haa6b8db_3 conda-forge
libstdcxx-ng 12.2.0 h46fd767_19 conda-forge
libtiff 4.4.0 h55922b4_4 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libuv 1.44.2 h166bdaf_0 conda-forge
libwebp-base 1.2.4 h166bdaf_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxml2 2.10.3 h7463322_0 conda-forge
libzlib 1.2.13 h166bdaf_4 conda-forge
libzopfli 1.0.3 h9c3ff4c_0 conda-forge
llvm-openmp 14.0.4 he0ac6c6_0 conda-forge
llvmlite 0.39.1 py310h58363a5_1 conda-forge
locket 1.0.0 pyhd8ed1ab_0 conda-forge
lz4 4.0.2 py310h5d5e884_0 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
lzo 2.10 h516909a_1000 conda-forge
mako 1.2.3 pyhd8ed1ab_0 conda-forge
mamba 0.27.0 py310hf87f941_0 conda-forge
markupsafe 2.1.1 py310h5764c6d_2 conda-forge
matplotlib-base 3.6.1 py310h8d5ebf3_1 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
mistune 2.0.4 pyhd8ed1ab_0 conda-forge
mpc 1.2.1 h9f54685_0 conda-forge
mpfr 4.1.0 h9202a9a_1 conda-forge
mpmath 1.2.1 pyhd8ed1ab_0 conda-forge
msgpack-python 1.0.4 py310hbf28c38_1 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
nbclassic 0.4.5 pyhd8ed1ab_0 conda-forge
nbclient 0.7.0 pyhd8ed1ab_0 conda-forge
nbconvert 7.2.3 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.2.3 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 7.2.3 pyhd8ed1ab_0 conda-forge
nbformat 5.7.0 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
networkx 2.8.7 pyhd8ed1ab_0 conda-forge
nodejs 18.11.0 h96d913c_0 conda-forge
nomkl 1.0 h5ca1d4c_0 conda-forge
notebook 6.5.1 pyha770c72_0 conda-forge
notebook-shim 0.2.0 pyhd8ed1ab_0 conda-forge
numba 0.56.3 py310ha5257ce_0 conda-forge
numexpr 2.8.3 py310hf05e7a9_101 conda-forge
numpy 1.23.4 py310h53a5b5f_1 conda-forge
oauthlib 3.2.2 pyhd8ed1ab_0 conda-forge
openblas 0.3.21 pthreads_h320a7e8_3 conda-forge
openjpeg 2.5.0 h7d73246_1 conda-forge
openpyxl 3.0.10 py310h5764c6d_2 conda-forge
openssl 1.1.1q h166bdaf_1 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
pamela 1.0.0 py_0 conda-forge
pandas 1.5.1 py310h769672d_1 conda-forge
pandoc 2.19.2 h32600fe_1 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
partd 1.3.0 pyhd8ed1ab_0 conda-forge
patsy 0.5.3 pyhd8ed1ab_0 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.2.0 py310h454ad03_3 conda-forge
pip 22.3 pyhd8ed1ab_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
prometheus_client 0.15.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.31 pyha770c72_0 conda-forge
protobuf 4.21.9 py310hd8f1fbe_0 conda-forge
psutil 5.9.3 py310h5764c6d_1 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pybind11-abi 4 hd8ed1ab_3 conda-forge
pycosat 0.6.4 py310h5764c6d_1 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pycurl 7.45.1 py310h2aed498_3 conda-forge
pygments 2.13.0 pyhd8ed1ab_0 conda-forge
pyjwt 2.6.0 pyhd8ed1ab_0 conda-forge
pyopenssl 22.1.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyrsistent 0.18.1 py310h5764c6d_2 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytables 3.7.0 py310hb60b9b2_3 conda-forge
python 3.10.6 h582c2e5_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.16.2 pyhd8ed1ab_0 conda-forge
python-json-logger 2.0.1 pyh9f0ad1d_0 conda-forge
python_abi 3.10 2_cp310 conda-forge
pytz 2022.5 pyhd8ed1ab_0 conda-forge
pywavelets 1.3.0 py310hde88566_2 conda-forge
pyyaml 6.0 py310h5764c6d_5 conda-forge
pyzmq 24.0.1 py310h330234f_1 conda-forge
readline 8.1.2 h0f457ee_0 conda-forge
reproc 14.2.3 h7f98852_0 conda-forge
reproc-cpp 14.2.3 h9c3ff4c_0 conda-forge
requests 2.28.1 pyhd8ed1ab_1 conda-forge
ruamel.yaml 0.17.21 py310h5764c6d_2 conda-forge
ruamel.yaml.clib 0.2.7 py310h5764c6d_0 conda-forge
ruamel_yaml 0.15.80 py310h5764c6d_1008 conda-forge
scikit-image 0.19.3 py310h769672d_2 conda-forge
scikit-learn 1.1.3 py310h0c3af53_1 conda-forge
scipy 1.9.3 py310hdfbd76f_1 conda-forge
seaborn 0.12.0 hd8ed1ab_0 conda-forge
seaborn-base 0.12.0 pyhd8ed1ab_0 conda-forge
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 65.5.0 pyhd8ed1ab_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
snappy 1.1.9 hbd366e4_1 conda-forge
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sqlalchemy 1.4.42 py310h5764c6d_1 conda-forge
stack_data 0.5.1 pyhd8ed1ab_0 conda-forge
statsmodels 0.13.2 py310hde88566_0 conda-forge
sympy 1.11.1 py310hff52083_2 conda-forge
tblib 1.7.0 pyhd8ed1ab_0 conda-forge
terminado 0.17.0 pyh41d4057_0 conda-forge
threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge
tifffile 2022.10.10 pyhd8ed1ab_0 conda-forge
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
tornado 6.1 py310h5764c6d_3 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
traitlets 5.5.0 pyhd8ed1ab_0 conda-forge
typing_extensions 4.4.0 pyha770c72_0 conda-forge
tzdata 2022e h191b570_0 conda-forge
unicodedata2 15.0.0 py310h5764c6d_0 conda-forge
urllib3 1.26.11 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.4.1 pyhd8ed1ab_0 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.3 pyhd8ed1ab_0 conda-forge
xlrd 2.0.1 pyhd8ed1ab_3 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
yaml-cpp 0.7.0 h27087fc_2 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zfp 1.0.0 h27087fc_3 conda-forge
zict 2.2.0 pyhd8ed1ab_0 conda-forge
zipp 3.10.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h166bdaf_4 conda-forge
zlib-ng 2.0.6 h166bdaf_0 conda-forge
zstd 1.5.2 h6239696_4 conda-forge
conda env:
name: base
channels:
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- alembic=1.8.1=pyhd8ed1ab_0
- altair=4.2.0=pyhd8ed1ab_1
- anyio=3.6.2=pyhd8ed1ab_0
- aom=3.5.0=h27087fc_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py310h5764c6d_3
- asttokens=2.0.8=pyhd8ed1ab_0
- async_generator=1.10=py_0
- attrs=22.1.0=pyh71513ae_1
- babel=2.10.3=pyhd8ed1ab_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.11.1=pyha770c72_0
- blas=2.116=openblas
- blas-devel=3.9.0=16_linux64_openblas
- bleach=5.0.1=pyhd8ed1ab_0
- blinker=1.5=pyhd8ed1ab_0
- blosc=1.21.1=h83bc5f7_3
- bokeh=2.4.3=pyhd8ed1ab_3
- bottleneck=1.3.5=py310hde88566_1
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py310h5764c6d_1005
- brunsli=0.1=h9c3ff4c_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- c-blosc2=2.4.3=h7a311fb_0
- ca-certificates=2022.9.24=ha878542_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2022.9.24=pyhd8ed1ab_0
- certipy=0.1.3=py_0
- cffi=1.15.1=py310h255011f_2
- cfitsio=4.1.0=hd9d235c_0
- charls=2.3.4=h9c3ff4c_0
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- click=8.1.3=unix_pyhd8ed1ab_2
- cloudpickle=2.2.0=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- conda=22.9.0=py310hff52083_1
- conda-package-handling=1.9.0=py310h5764c6d_1
- configurable-http-proxy=4.5.3=he2f69ee_3
- contourpy=1.0.6=py310hbf28c38_0
- cryptography=38.0.2=py310h597c629_2
- cycler=0.11.0=pyhd8ed1ab_0
- cython=0.29.32=py310hd8f1fbe_1
- cytoolz=0.12.0=py310h5764c6d_1
- dask=2022.10.0=pyhd8ed1ab_2
- dask-core=2022.10.0=pyhd8ed1ab_2
- dav1d=1.0.0=h166bdaf_1
- debugpy=1.6.3=py310hd8f1fbe_1
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- dill=0.3.6=pyhd8ed1ab_1
- distributed=2022.10.0=pyhd8ed1ab_2
- entrypoints=0.4=pyhd8ed1ab_0
- et_xmlfile=1.0.1=py_1001
- executing=1.1.1=pyhd8ed1ab_0
- flit-core=3.7.1=pyhd8ed1ab_0
- fonttools=4.38.0=py310h5764c6d_1
- freetype=2.12.1=hca18f0e_0
- fsspec=2022.10.0=pyhd8ed1ab_0
- giflib=5.2.1=h36c2ea0_2
- gmp=6.2.1=h58526e2_0
- gmpy2=2.1.2=py310h3ec546c_1
- greenlet=1.1.3.post0=py310hd8f1fbe_0
- h5py=3.7.0=nompi_py310h416281c_102
- hdf5=1.12.2=nompi_h2386368_100
- heapdict=1.0.1=py_0
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- imagecodecs=2022.9.26=py310h90cd304_3
- imageio=2.22.0=pyhfa7a67d_0
- importlib-metadata=5.0.0=pyha770c72_1
- importlib_resources=5.10.0=pyhd8ed1ab_0
- ipykernel=6.17.0=pyh210e3f2_0
- ipympl=0.9.2=pyhd8ed1ab_0
- ipython=8.6.0=pyh41d4057_1
- ipython_genutils=0.2.0=py_1
- ipywidgets=8.0.2=pyhd8ed1ab_1
- jedi=0.18.1=pyhd8ed1ab_2
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=4.16.0=pyhd8ed1ab_0
- jupyter_client=7.3.4=pyhd8ed1ab_0
- jupyter_core=4.11.1=py310hff52083_1
- jupyter_server=1.21.0=pyhd8ed1ab_0
- jupyter_telemetry=0.1.0=pyhd8ed1ab_1
- jupyterhub=3.0.0=pyh2a2186d_1
- jupyterhub-base=3.0.0=pyh2a2186d_1
- jupyterlab=3.5.0=pyhd8ed1ab_0
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_server=2.16.2=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.3=pyhd8ed1ab_0
- jxrlib=1.1=h7f98852_2
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py310hbf28c38_1
- krb5=1.19.3=h3790be6_0
- lcms2=2.13.1=h6ed2654_0
- ld_impl_linux-64=2.39=hc81fddc_0
- lerc=4.0.0=h27087fc_0
- libaec=1.0.6=h9c3ff4c_0
- libarchive=3.5.2=hb890918_3
- libavif=0.11.1=h5cdd6b5_0
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=16_linux64_openblas
- libcurl=7.86.0=h7bff187_0
- libdeflate=1.14=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- liblapacke=3.9.0=16_linux64_openblas
- libllvm11=11.1.0=he0ac6c6_5
- libmamba=0.27.0=h0dd8ff0_0
- libmambapy=0.27.0=py310hab0e683_0
- libnghttp2=1.47.0=hdcd2b5c_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.38=h753d276_0
- libprotobuf=3.21.9=h6239696_0
- libsodium=1.0.18=h36c2ea0_1
- libsolv=0.7.22=h6239696_0
- libsqlite=3.39.4=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.4.0=h55922b4_4
- libuuid=2.32.1=h7f98852_1000
- libuv=1.44.2=h166bdaf_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- libzopfli=1.0.3=h9c3ff4c_0
- llvm-openmp=14.0.4=he0ac6c6_0
- llvmlite=0.39.1=py310h58363a5_1
- locket=1.0.0=pyhd8ed1ab_0
- lz4=4.0.2=py310h5d5e884_0
- lz4-c=1.9.3=h9c3ff4c_1
- lzo=2.10=h516909a_1000
- mako=1.2.3=pyhd8ed1ab_0
- mamba=0.27.0=py310hf87f941_0
- markupsafe=2.1.1=py310h5764c6d_2
- matplotlib-base=3.6.1=py310h8d5ebf3_1
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=2.0.4=pyhd8ed1ab_0
- mpc=1.2.1=h9f54685_0
- mpfr=4.1.0=h9202a9a_1
- mpmath=1.2.1=pyhd8ed1ab_0
- msgpack-python=1.0.4=py310hbf28c38_1
- munkres=1.1.4=pyh9f0ad1d_0
- nbclassic=0.4.5=pyhd8ed1ab_0
- nbclient=0.7.0=pyhd8ed1ab_0
- nbconvert=7.2.3=pyhd8ed1ab_0
- nbconvert-core=7.2.3=pyhd8ed1ab_0
- nbconvert-pandoc=7.2.3=pyhd8ed1ab_0
- nbformat=5.7.0=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- networkx=2.8.7=pyhd8ed1ab_0
- nodejs=18.11.0=h96d913c_0
- nomkl=1.0=h5ca1d4c_0
- notebook=6.5.1=pyha770c72_0
- notebook-shim=0.2.0=pyhd8ed1ab_0
- numba=0.56.3=py310ha5257ce_0
- numexpr=2.8.3=py310hf05e7a9_101
- numpy=1.23.4=py310h53a5b5f_1
- oauthlib=3.2.2=pyhd8ed1ab_0
- openblas=0.3.21=pthreads_h320a7e8_3
- openjpeg=2.5.0=h7d73246_1
- openpyxl=3.0.10=py310h5764c6d_2
- openssl=1.1.1q=h166bdaf_1
- packaging=21.3=pyhd8ed1ab_0
- pamela=1.0.0=py_0
- pandas=1.5.1=py310h769672d_1
- pandoc=2.19.2=h32600fe_1
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- partd=1.3.0=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.2.0=py310h454ad03_3
- pip=22.3=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- prometheus_client=0.15.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.31=pyha770c72_0
- protobuf=4.21.9=py310hd8f1fbe_0
- psutil=5.9.3=py310h5764c6d_1
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pybind11-abi=4=hd8ed1ab_3
- pycosat=0.6.4=py310h5764c6d_1
- pycparser=2.21=pyhd8ed1ab_0
- pycurl=7.45.1=py310h2aed498_3
- pygments=2.13.0=pyhd8ed1ab_0
- pyjwt=2.6.0=pyhd8ed1ab_0
- pyopenssl=22.1.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyrsistent=0.18.1=py310h5764c6d_2
- pysocks=1.7.1=pyha2e5f31_6
- pytables=3.7.0=py310hb60b9b2_3
- python=3.10.6=h582c2e5_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.2=pyhd8ed1ab_0
- python-json-logger=2.0.1=pyh9f0ad1d_0
- python_abi=3.10=2_cp310
- pytz=2022.5=pyhd8ed1ab_0
- pywavelets=1.3.0=py310hde88566_2
- pyyaml=6.0=py310h5764c6d_5
- pyzmq=24.0.1=py310h330234f_1
- readline=8.1.2=h0f457ee_0
- reproc=14.2.3=h7f98852_0
- reproc-cpp=14.2.3=h9c3ff4c_0
- requests=2.28.1=pyhd8ed1ab_1
- ruamel.yaml=0.17.21=py310h5764c6d_2
- ruamel.yaml.clib=0.2.7=py310h5764c6d_0
- ruamel_yaml=0.15.80=py310h5764c6d_1008
- scikit-image=0.19.3=py310h769672d_2
- scikit-learn=1.1.3=py310h0c3af53_1
- scipy=1.9.3=py310hdfbd76f_1
- seaborn=0.12.0=hd8ed1ab_0
- seaborn-base=0.12.0=pyhd8ed1ab_0
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=65.5.0=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.9=hbd366e4_1
- sniffio=1.3.0=pyhd8ed1ab_0
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- soupsieve=2.3.2.post1=pyhd8ed1ab_0
- sqlalchemy=1.4.42=py310h5764c6d_1
- stack_data=0.5.1=pyhd8ed1ab_0
- statsmodels=0.13.2=py310hde88566_0
- sympy=1.11.1=py310hff52083_2
- tblib=1.7.0=pyhd8ed1ab_0
- terminado=0.17.0=pyh41d4057_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tifffile=2022.10.10=pyhd8ed1ab_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- tomli=2.0.1=pyhd8ed1ab_0
- toolz=0.12.0=pyhd8ed1ab_0
- tornado=6.1=py310h5764c6d_3
- tqdm=4.64.1=pyhd8ed1ab_0
- traitlets=5.5.0=pyhd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022e=h191b570_0
- unicodedata2=15.0.0=py310h5764c6d_0
- urllib3=1.26.11=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- websocket-client=1.4.1=pyhd8ed1ab_0
- wheel=0.37.1=pyhd8ed1ab_0
- widgetsnbextension=4.0.3=pyhd8ed1ab_0
- xlrd=2.0.1=pyhd8ed1ab_3
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yaml-cpp=0.7.0=h27087fc_2
- zeromq=4.3.4=h9c3ff4c_1
- zfp=1.0.0=h27087fc_3
- zict=2.2.0=pyhd8ed1ab_0
- zipp=3.10.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zlib-ng=2.0.6=h166bdaf_0
- zstd=1.5.2=h6239696_4
prefix: /opt/conda
Command Line Output
Generating a RSA private key ............+++++ ........+++++ writing new private key to '/home/jovyan/.local/share/jupyter/notebook.pem' ----- [I 2022-11-03 13:05:00.674 ServerApp] jupyterlab | extension was successfully linked. Generating a RSA private key .......+++++ ......+++++ writing new private key to '/home/jovyan/.local/share/jupyter/notebook.pem' ----- [W 2022-11-03 13:05:00.761 NotebookApp] 'ip' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release. [W 2022-11-03 13:05:00.761 NotebookApp] 'port' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release. [W 2022-11-03 13:05:00.762 NotebookApp] 'port' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release. [W 2022-11-03 13:05:00.762 NotebookApp] 'certfile' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release. [I 2022-11-03 13:05:00.767 ServerApp] nbclassic | extension was successfully linked. [I 2022-11-03 13:05:00.792 LabApp] JupyterLab extension loaded from /opt/conda/lib/python3.10/site-packages/jupyterlab [I 2022-11-03 13:05:00.792 LabApp] JupyterLab application directory is /opt/conda/share/jupyter/lab [I 2022-11-03 13:05:00.795 ServerApp] jupyterlab | extension was successfully loaded. [I 2022-11-03 13:05:00.798 ServerApp] nbclassic | extension was successfully loaded. [I 2022-11-03 13:05:00.798 ServerApp] The port 8888 is already in use, trying another port. [I 2022-11-03 13:05:00.798 ServerApp] Serving notebooks from local directory: /home/jovyan [I 2022-11-03 13:05:00.798 ServerApp] Jupyter Server 1.21.0 is running at: [I 2022-11-03 13:05:00.798 ServerApp] https://d0959c449c7b:8889/lab?token=9de20cddea103fcc301db6143c070d3c0e5b7a2efb450240 [I 2022-11-03 13:05:00.798 ServerApp] or https://127.0.0.1:8889/lab?token=9de20cddea103fcc301db6143c070d3c0e5b7a2efb450240 [I 2022-11-03 13:05:00.798 ServerApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). [C 2022-11-03 13:05:00.801 ServerApp]To access the server, open this file in a browser: file:///home/jovyan/.local/share/jupyter/runtime/jpserver-881-open.html Or copy and paste one of these URLs: https://d0959c449c7b:8889/lab?token=9de20cddea103fcc301db6143c070d3c0e5b7a2efb450240 or https://127.0.0.1:8889/lab?token=9de20cddea103fcc301db6143c070d3c0e5b7a2efb450240
Browser Output
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