Julien Cohen-Adad

> Could this not already be accomplished via the exclude/exclude_list parameters that can be added as part of sct_run_batch's configuration file? yes indeed, but currently these exclude/exclude_list parameters have to...

I might have found the culprit: https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/6888ea028159024d9a6f5f674463ab366825f880/spinalcordtoolbox/reports/slice.py#L58

> Does `_resample_slicewise` write to disk or is that happening elsewhere? it does not write to disk-- i generated the nifti file via the debugger (with a `nibabel.save()`)

@cfhammill sorry, my description of the issue was obscure. I've updated the title, and here are some clarifications: the problem is that the QC report does not provide an accurate...

@alexfoias can you please test? sorry i do not have the time-- thx

@alexfoias did you import the script from the FSLeyes menu or did you just "run the script" in your Terminal? It should be the former. which makes me think: @joshuacwnewton...

Thank you very much for reporting this bug @abelfodil ! This is greatly appreciated. Your suggested recommendations sound good. We will implement them ASAP.

thank you for identifying these additional improvements @joshuacwnewton 🙏

thank you for reporting this issue, @gaspardcereza . I suspect there is something fishy with dtype conversion

> But, since we have the min/max of the data, we can just do the inverse scaling after processing is finished, right? that is correct. > (I imagine this wasn't...