Jasper Linthorst

Hi, Path names in the gfa files that you’re trying to anchor need to be unique. I guess that that is where the error comes from. The *-prefixed paths are...

Hi Christian, For some reason subprocess raises an OSError while attempting to call 'muscle'. This exception isn't handled properly at the moment, which is something that I will fix. I...

Hi Erik, Short answer: Yes. Of course this depends a lot on the available amount of RAM, but I I've been using REVEAL to build graphs for multiple human genome...

I now forgot to mention that of course, to construct graphs for multiple genomes you can also create an alignment between graphs in subsequent passes without depending on the construction...

Hi Erik, Sorry for my late reply, I had a small holiday. About the scripts, no, not really, but I'll try to set up a wiki to describe the intermediate...

Hi Travis, I've been a bit hesitant with respect to creating a release for reveal as I still consider it a work in progress, that said, I understand the need...

The actual tag is 0.1 for as far as I can see (git tag), so that should correspond to the version in setup.py. Do you want me to change the...

Hi Sam, The graph encoded in the resulting GFA file essentially describes the alignment, it should be pretty straightforward to parse. I don't have any scripts that output the graph...

Hi Sam, Which options did you change? There are various options for which a change within a 'reasonable' range might not affect the resulting graph. I should write some more...

Hi Sam, Sorry for replying to this after so long. These parameters need proper implementations, documentation, testing and some rethinking on my part, but I'll try to write down the...