jaimergp

Results 951 comments of jaimergp

I suspect this has to do with the version of `matplotlib` Chimera itself ships, which will get loaded before the one in your `conda` env. This is not an easy...

In principle, yes. Try to follow the instructions above and let me know if it works for you! A second alternative would be: 1. Use `pychimera notebook` to generate all...

(Please, try to use the issue template for bug reports, otherwise I will have to ask the same questions over and over again). Installation method? Also, open Tangram, then the...

I managed to reproduce the bug! Apparently, rdkit is being installed off of `conda-forge` (and not the `rdkit` channel itself), which causes some problems. I solved it by forcing it...

Btw, I have updated the docs to fix this bug (thanks!) and checked with a bare installation. Confirmed and fixed! Feel free to close this when you confirm it on...

Is that the only molecule failing? I had success with `1RFO` (first submodel only). Try to run that to discard any problems with the system (although it looks more of...

Can you run these commands and send the output, please? ``` conda activate ~/tangram conda list ```

`jinja2` is listed. What is the result of `which ommprotocol`? I am worried that you might a past installation hanging on `$PATH` and the GUI is calling that one instead...

Hmmm, that _should_ be the value. Let's see if Chimera has something to do... Open Tangram and then the IDLE. Execute these commands: ``` from distutils.spawn import find_executable find_executable('ommprotocol') ```

Partially addressed in commit 0743d887f4aad95f602c1ca803f7f9646c5a6e0d. I'll keep this issue open to reflect changes when new properties (alpha and beta electrons) are merged in cclib.