Intro-to-ChIPseq
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hbctraining
Intro to ChIPseq using HPC
Hi @cjfields Recently I ran my ATAC-seq data with Genrich which can implment joint-peak calling. Then I want to use narrowPeak file as input file for DiffBind to conduct differential...
I assume this unmatched HTML tag was once used to get block element behavior and was missed in a removal.
Ask HMSRC to update deeptools version. Right now the training material uses 3.0.2.
It seems like the score they ask us to use when filtering reproducible peaks does not work out when I tried manually computing it. Found this with a current consult...
The vignette has been upgraded recently, need to review and see what additional features we can incorporate into our materials
look for intermediate bams, look at the job.out files, and also discuss sacct to see how jobs are doing maybe add and SBATCH directive to get an err file?
note that we are not just removing multimappers, but also duplicates and unmapped reads throughout the lesson
