Givanna Putri

Hi guys, I'm encountering the same issue. The `read_vizgen` function in master threw me the following error: ``` 'DataFrameView' object has no attribute '_view_args' ``` from this line of code...

I just tested running flowsom on around 50 million cells on my mac with 24GB ram, and I ran into the same issue. I'll look into the `run.flowsom` function and...

We will be making a big update to Spectre soon that will include some more tutorial on batch correction. So stay tuned!

There will be functions to run cycombine and other batch alignment tools in the new update ;)

@denvercal1234GitHub I've implemented cycombine in v2-dev branch (https://github.com/ImmuneDynamics/Spectre/blob/v2-dev/R/run.cycombine.R). I've only tested it on one toy dataset and it seems to be working. So feel free to give it a try...

I don't think we have any functions that can do correlation/co-expression analysis. We will need to look into this. In the meantime, I just realised that we actually have implemented...

It may have been fixed in development branch. Can you try re-installing from development branch and try?

Thanks for bringing this up @Kajlinko. We'll see if we can trim the repo down further. Another alternative is by physically cloning the repository (make sure it's the right branch...

I believe the channel values serve as an alternative to the bi-ex transformation, with both methods aiming to preserve the distribution of marker expression. Given their distinct way of transforming...

It may have been due to the normalisation function applied to each column. By default, `normalise` parameter is set to TRUE, which I think transform the values between the range...