Cell_BLAST
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gao-lab
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
Hi Developer, The cell-blast had been installed in conda environment with python3.9 and then install the tensorflow with pip by default version: tensorflow 2.9.1 tensorflow-estimator 2.9.0 when i run the...
Hi, thanks for building this great tool! I have successfully computed 5 DIRECTi models and created a `blast` object. However, when I tried to save it I received the following...
Hello,guys, I have seen a closed prior question with the same title, but I got fastq from 10X machine and then performed cellranger count method, quite a typical routine I...
Hi Dr. Thanks to develop the great tools. I want to use your data to test the pipeline for further analysis myself data. but i can not get the data...
Hello, Thanks again for such a great tool! I'm currently trying to use Cell BLAST to integrate some pretty diverse datasets; several mouse scRNAseq atlases, a zebrafish dataset, and fly...
I did not found the many function (e.g., find_variable_genes). I don't know why? This is my code: import Cell_BLAST as cb 
Hello, will you update the reference dataset? For example, the brain of fruit flies. Thank you for this useful tool, thank you.
Hi, Cell BLAST team! Recently, I wanted to use your method to perform the Cross-species cell type annotation tasks. However, I cannot see any cross-species cell type annotation examples on...
Hi Cellblast Team I'm not a python expert I have a problem with wasserstein_distance TypingError: Failed in nopython mode pipeline (step: nopython frontend) No implementation of function Function() found for...
Hi CellBLAST team! I want to annotate a very low scRNA-seq dataset with CellBlast, which is only about 60 cells in it. I encountered an error when run `cb.directi.fit_DIRECTi()` function....
