eugbrenner

> I managed to solve this issue with modifying the setup.py file: #46 Switching off fa2/fautil.pxd seems to be a partial solution. This is what I get when run scanpy:...

@AminAlam. You are right, I did no have cython installed in this venv. Just fixed it. But still have this message 'Warning: uncompiled fa2util module. Compile with cython for a...

Hi, @AminAlam , What I did from the very begining is: 1. Git-cloned fa2 source files 2. Backed up setup.py 3. Uncommented line №41 in setup.py ('opts = {"py_modules": ["fa2.fa2util"]}')...

@AminAlam Thanks for your reply. I've done everything that you advised and managed to install fa2_modified into python3.9.17 + cython-3.0.10 and python3.8.13 + cython-3.0.0 virtual environments. Nevertheless, I still get...

@AminAlam Version 0.3.9 can be installed and run on python3.9.17 + cython-3.0.10 fine! Thank you. Do you have any suggestions to make scanpy use it instead fa2? scanpy.tl.draw_graph() keeps warning...