enrichment_analysis
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enhanced visualization considering hierarchical nature of enrichment terms
- use this package for simplifying results AND word clouds next to heatmaps!
- http://www.bioconductor.org/packages/release/bioc/html/simplifyEnrichment.html
- uses complexHeatmap
- traverse up the GO hierarchy and find most common parent node as systematic high level annotation of multiple GO terms
- implement pathway-based visualization
- “old” for mapping results on a (KEGG) pathway: pathview https://pathview.r-forge.r-project.org/
- "new” Systems Biology Graphical Notation includes many more pathway sources, plus vector graphics. SBGNview https://www.bioconductor.org/packages/release/bioc/html/SBGNview.html