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enhanced visualization considering hierarchical nature of enrichment terms

Open sreichl opened this issue 2 years ago • 0 comments

  • use this package for simplifying results AND word clouds next to heatmaps!
    • http://www.bioconductor.org/packages/release/bioc/html/simplifyEnrichment.html
    • uses complexHeatmap
  • traverse up the GO hierarchy and find most common parent node as systematic high level annotation of multiple GO terms
  • implement pathway-based visualization
    • “old” for mapping results on a (KEGG) pathway: pathview https://pathview.r-forge.r-project.org/
    • "new” Systems Biology Graphical Notation includes many more pathway sources, plus vector graphics. SBGNview https://www.bioconductor.org/packages/release/bioc/html/SBGNview.html

sreichl avatar Sep 02 '23 16:09 sreichl