David Clunie

Reported as QuPath Issue [#1732](https://github.com/qupath/qupath/issues/1732)

@jcupitt that would be great, thanks. If you need any more samples let me know. You can probably find lots on [IDC](https://portal.imaging.datacommons.cancer.gov/explore/filters/?Modality_op=OR&Modality=SM) (we use J2k a lot, for SVS files...

@CPBridge I will take a look

As I think you have already concluded, PixelData is not encoded using InlineBinary in JSON in DICOM PS3.18 but rather BulkDataURI with fragmentation (and basic offset table, if any) removed....

IMHO there is no point in considering any other value of [ImageType for WSI](https://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.8.12.4.html#sect_C.8.12.4.1.1) than Value 3 when trying to determine what images to display and what type of image...

Hi @erikogabrielsson @ChristianMarzahl The Number of Frames has to match the number of frames in the SOP Instance. The number of focal planes in Total Pixel Matrix Focal Planes also...

Presentation states are intended for this - see https://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.10.5.html

If you want to say something (a text comment) about a region, then SR is the way. There is no (within SR) mechanism to indicate how or where that text...

Just to be clear that we are talking about the same thing, I am not against making the overlay/heatmap transparent (have < 100% opacity, user controllable) in addition to having...

Remember that we already have a UI for setting different superimposed optical paths to a single color w. control over RGB and opacity, which could be re-used for such an...