Dario Beraldi
There is a bit of confusion how ASCIIGenome recognises GTF/GFF2/GFF3 format extensions. This is how it *should* be: * GTF (extension .gtf) and GFF2 (ext .gff2) are the same format....
This should be enabled: ``` extend 10k extend 10m ```
Generation of consensus sequence should be aware of BS mode so it's easier to spot variations and methylation calls. For example, you could simply use lower case c, t, y...
It appears tabix files from ftp cannot be read. For example, read a vcf file from 1000genomes: ``` import htsjdk.samtools.seekablestream.SeekableStream; import htsjdk.samtools.seekablestream.SeekableStreamFactory; import htsjdk.tribble.readers.TabixReader; String ftp= "ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase1/analysis_results/input_call_sets/ALL.wex.union_illumina_wcmc_bcm_bc_bi.20110521.snps.exome.sites.vcf.gz"; // Here it...
``` xacct.py -v xacct.py 0.3.0 ``` Sort by MaxRSS gives: ``` xacct.py -s MaxRSS Traceback (most recent call last): File "/home/db291g/bin/xacct.py", line 341, in sacct_mrg= sorted(sacct_mrg, key=lambda k: k[s], reverse=...
Important TODO: tableCat.py needs to check that gzip exits clean!
Hi- I just discovered biotite and it looks like a great project - thanks! I need to query UniProt to get proteins for a given taxonomy and containing a certain...
Hi- Thanks for the great tool! It seems that column names starting with a digit don't play well with the `intersections` option. This is ok: ``` movies
snakefmt v0.4.0 reformats this rule: ``` rule one: output: out_file="out.txt", shell: r""" cat
In options `--yMin` and `--yMax` of `plotHeatmap` would you consider adding an "auto" option that scales each plot inidividually to its minimum and maximum, respectively? For example, in the plots...