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multiple commands on non-interactive

Open avilella opened this issue 9 years ago • 1 comments

Hi @dariober ,

Silly question but, how do I input multiple -x commands for a non-interactive bash statement? E.g.

ASCIIGenome -fa $fa -ni -x "command1 opt1 command2 opt2 ... etc" $bam

avilella avatar Mar 03 '17 15:03 avilella

Hi again- you can separate commands with the && syntax (like in Unix), e.g.:

ASCIIGenome -x 'orderTracks PEO1 PEO4 && colorTrack blue PEO1 && trackHeight 10 DMF' ...

Does suite what you are trying to do?

(I realised this is not explicitly said in the documentation. I'll amend it)

dariober avatar Mar 03 '17 16:03 dariober