Update monai requirement from ==1.2.0 to ==1.3.0

Open dependabot[bot] opened this issue 2 years ago • 0 comments

Updates the requirements on monai to permit the latest version.

Release notes

1.3.0

Added

Intensity transforms ScaleIntensityFixedMean and RandScaleIntensityFixedMean (#6542)

UltrasoundConfidenceMapTransform used for computing confidence map from an ultrasound image (#6709)

channel_wise support in RandScaleIntensity and RandShiftIntensity (#6793, #7025)

RandSimulateLowResolution and RandSimulateLowResolutiond (#6806)

SignalFillEmptyd (#7011)

Euclidean distance transform DistanceTransformEDT with GPU support (#6981)

Port loss and metrics from monai-generative (#6729, #6836)

Support invert_image and retain_stats in AdjustContrast and RandAdjustContrast (#6542)

New network DAF3D and Quicknat (#6306)

Support sincos position embedding (#6986)

ZarrAvgMerger used for patch inference (#6633)

Dataset tracking support to MLFlowHandler (#6616)

Considering spacing and subvoxel borders in SurfaceDiceMetric (#6681)

CUCIM support for surface-related metrics (#7008)

loss_fn support in IgniteMetric and renamed it to IgniteMetricHandler (#6695)

CallableEventWithFilter and Events options for trigger_event in GarbageCollector (#6663)

Support random sorting option to GridPatch, RandGridPatch, GridPatchd and RandGridPatchd (#6701)

Support multi-threaded batch sampling in PatchInferer (#6139)

SoftclDiceLoss and SoftDiceclDiceLoss (#6763)

HausdorffDTLoss and LogHausdorffDTLoss (#6994)

Documentation for TensorFloat-32 (#6770)

Docstring format guide (#6780)

GDSDataset support for GDS (#6778)

PyTorch backend support for MapLabelValue (#6872)

filter_func in copy_model_state to filter the weights to be loaded and filter_swinunetr (#6917)

stats_sender to MonaiAlgo for FL stats (#6984)

freeze_layers to help freeze specific layers (#6970)

misc.

Refactor multi-node running command used in Auto3DSeg into dedicated functions (#6623)

Support str type annotation to device in ToTensorD (#6737)

Improve logging message and file name extenstion in DataAnalyzer for Auto3DSeg (#6758)

Set data_range as a property in SSIMLoss (#6788)

Unify environment variable access (#7084)

end_lr support in WarmupCosineSchedule (#6662)

Add ClearML as optional dependency (#6827)

yandex.disk support in download_url (#6667)

Improve config expression error message (#6977)

Fixed

transforms

Make convert_box_to_mask throw errors when box size larger than the image (#6637)

Fix lazy mode in RandAffine (#6774)

Raise ValueError when map_items is bool in Compose (#6882)

Improve performance for NormalizeIntensity (#6887)

Fix mismatched shape in Spacing (#6912)

Avoid FutureWarning in CropForeground (#6934)

Fix Lazy=True ignored when using Dataset call (#6975)

Shape check for arbitrary types for DataStats (#7082)

data

... (truncated)

Changelog

Sourced from monai's changelog.

[1.3.0] - 2023-10-12

Added

Intensity transforms ScaleIntensityFixedMean and RandScaleIntensityFixedMean (#6542)

UltrasoundConfidenceMapTransform used for computing confidence map from an ultrasound image (#6709)

channel_wise support in RandScaleIntensity and RandShiftIntensity (#6793, #7025)

RandSimulateLowResolution and RandSimulateLowResolutiond (#6806)

SignalFillEmptyd (#7011)

Euclidean distance transform DistanceTransformEDT with GPU support (#6981)

Port loss and metrics from monai-generative (#6729, #6836)

Support invert_image and retain_stats in AdjustContrast and RandAdjustContrast (#6542)

New network DAF3D and Quicknat (#6306)

Support sincos position embedding (#6986)

ZarrAvgMerger used for patch inference (#6633)

Dataset tracking support to MLFlowHandler (#6616)

Considering spacing and subvoxel borders in SurfaceDiceMetric (#6681)

CUCIM support for surface-related metrics (#7008)

loss_fn support in IgniteMetric and renamed it to IgniteMetricHandler (#6695)

CallableEventWithFilter and Events options for trigger_event in GarbageCollector (#6663)

Support random sorting option to GridPatch, RandGridPatch, GridPatchd and RandGridPatchd (#6701)

Support multi-threaded batch sampling in PatchInferer (#6139)

SoftclDiceLoss and SoftDiceclDiceLoss (#6763)

HausdorffDTLoss and LogHausdorffDTLoss (#6994)

Documentation for TensorFloat-32 (#6770)

Docstring format guide (#6780)

GDSDataset support for GDS (#6778)

PyTorch backend support for MapLabelValue (#6872)

filter_func in copy_model_state to filter the weights to be loaded and filter_swinunetr (#6917)

stats_sender to MonaiAlgo for FL stats (#6984)

freeze_layers to help freeze specific layers (#6970)

misc.

Refactor multi-node running command used in Auto3DSeg into dedicated functions (#6623)

Support str type annotation to device in ToTensorD (#6737)

Improve logging message and file name extenstion in DataAnalyzer for Auto3DSeg (#6758)

Set data_range as a property in SSIMLoss (#6788)

Unify environment variable access (#7084)

end_lr support in WarmupCosineSchedule (#6662)

Add ClearML as optional dependency (#6827)

yandex.disk support in download_url (#6667)

Improve config expression error message (#6977)

Fixed

transforms

Make convert_box_to_mask throw errors when box size larger than the image (#6637)

Fix lazy mode in RandAffine (#6774)

Raise ValueError when map_items is bool in Compose (#6882)

Improve performance for NormalizeIntensity (#6887)

Fix mismatched shape in Spacing (#6912)

Avoid FutureWarning in CropForeground (#6934)

Fix Lazy=True ignored when using Dataset call (#6975)

Shape check for arbitrary types for DataStats (#7082)

data

... (truncated)

Commits

865972f Fix unsuitable default value to bundle_root in ckpt_export (#7124)
e36982b update validation epoch (#7121)
4743945 update changelog and docs for v1.3 (#7110)
2b1e3d0 Add support for metatensor in AddGuidanceFromPointsDeepEditd and ResizeGuidan...
8d730cd 6387 update_kwargs for merging multiple configs (#7109)
fc1350a 7107 Add support to validate at training start (#7108)
5c6d199 Code formatting for user specified directories (#7106)
825021d EnsureTyped flexible dtype (#7104)
2b0a95e auto updates (#7105)
7930f85 Add weight in DiceLoss (#7098)
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Oct 13 '23 02:10 dependabot[bot]