Chris Fields

@majensen we can do that. Though those tests shouldn't be run by default, they generally require explicitly asking for network tests, which can be flaky based on network and remote...

Unfortunately not easily. I believe @majensen was looking into this for bioperl-run but I don’t know of any precedent dists that do this in CPAN. chris On Feb 8, 2016,...

--- Original Redmine Comment Author Name: **Chris Fields** Original Date: 2011-04-20T16:43:09Z --- Commit commit:22eb8ef8 fixes tests with BLAST+ `v.2.2.23+`, but later versions are failing: ``` cjfields@pyrimidine:~/bioperl/bioperl-run$ blastp -version blastp: 2.2.24+...

--- Original Redmine Comment Author Name: **Chris Fields** Original Date: 2011-04-20T18:11:21Z --- Basically, NCBI devs made significant API changes to windowmasker after BLAST+ v 2.2.23 that break this wrapper, with...

--- Original Redmine Comment Author Name: **Chris Fields** Original Date: 2011-04-20T21:14:13Z --- Mainly fixed to handle the latest BLAST+. There are still some odd changes even between BLAST+ 2.2.24+ and...

--- Original Redmine Comment Author Name: **Sendu Bala** Original Date: 2006-09-02T11:42:12Z --- Albert, do you still have interest in doing this?

--- Original Redmine Comment Author Name: **Sendu Bala** Original Date: 2006-09-02T12:22:01Z --- You should discuss this on the list if you haven’t already, but at first glance it seems reasonable...

--- Original Redmine Comment Author Name: **Chris Fields** Original Date: 2007-01-02T14:18:06Z --- According to the mail list: http://bioperl.org/pipermail/bioperl-l/2007-January/024554.html Sendu is planning on adding a quiet() method for anything implementing WrapperBase....

--- Original Redmine Comment Author Name: **Nathan Haigh** Original Date: 2007-01-02T15:33:11Z --- It may well help. However, if I remember correctly, I think some actual data is printed to STDOUT…..although...

--- Original Redmine Comment Author Name: **Chris Fields** Original Date: 2009-09-01T08:43:03Z --- These tests aren’t normally run anyway (it requires an optional BLAST installation), so the issue is minor. Should...