Bradley T. Martin

Ok that makes sense. Thanks for your input. If I were to modify the Locator code to accommodate the microhaplotypes, generally what steps would be involved? I am curious because...

Hi Madison. Sorry for my delayed reply. It looks like something is wrong with the loci.file. Can you show me what the contents of the spoofed loci.file look like? Either...

I should clarify that if you set ```loci.file=NULL``` then it should make a spoofed one. It should be called "loci_map.txt"

I think something might be wrong in a previous step. The spoofed loci.file gets made by looking at the ```df.list``` object, so something might be wrong with df.list. Can you...

Hi Allyson, My collaborator @tkchafin was mostly working on this bug last time it seems. I don't know if he had fixed the bug or figured out what the cause...

Thanks for the heads-up. I haven't updated ClineHelpR in a while so jinja2 or conda might have released an update that broke the dependency. I'll try to fix it soon.

Sorry for the confusion there. I'll add this to my list of things to fix too.

Hi, If you have a fasta file for the reference genome and another fasta file for your query scaffolds, You can run your fasta files through minimap2 to generate a...

Oh ok. Now I understand. I'm going to mark this as a requested feature that we will try to get to in the future. In the meantime, if you don't...