ClineHelpR
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R function: combine_bgc_output
This function assumes that the lnl output suffix includes "LnL" but using the docker image the output in the suffix has "lnl" (lowercase). Workaround: rename the output files changing the lnl to LnL
example: bgc produces: test_stat_lnl_1 change it to: test_stat_LnL_1
Sorry for the confusion there. I'll add this to my list of things to fix too.
No problem, great job doing this! BGC all works. I haven't tested the introgress part though! Will probably do at some point!