MedicalZooPytorch
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A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
When I used the mrbrains18 dataset for training, the following error occurred Traceback (most recent call last): File "./train_mrbrains_9_classes.py", line 81, in main() File "./train_mrbrains_9_classes.py", line 26, in main path='/home/zwj/MedicalZooPytorch-master/datasets/mrbrains_2018/training')...
Hello！ I have trained a segmentation model using my own datasets，there is nothing wrong with my valuation dataset and the dice is high.But when I use the 'non_overlap_padding' fuction in...
I would like to ask about the format of using your own data set, including how many bits of data it is and what data must be included in the...
Can you tell me why cone to it and how to solve it? Traceback (most recent call last): File "train_brats2018_new.py", line 75, in main() File "train_brats2018_new.py", line 33, in main...
Hi, When trying to do inference using iseg2017 model. I am getting below error ` File "inference.py", line 80, in main() File "inference.py", line 24, in main training_generator, val_generator, full_volume,...
Can you please provide the exact command lines to train and infer a segmentation model on the COVID dataset? I see you've provided data loaders, but it's not quite clear...
Would you please share your pre-trained model weights (on any datasets)? Might be greatly helpful.
When I read MRbrainS18 data and use 'load_medical_image' to get volume, I find that the shape of the volume is (240, 240, 48) -> (width, height, slice). However, the shape...
Hi, How to perform 3D segmentation to the custom dataset with 3D volume and corresponding segmentation. A dataset file structure might be helpful for iseg_2017 example. Thanks
TODO: - [x] Restructure project - [ ] Base classes - [x] Base dataset class - [ ] Base augment class - [ ] Inference with pretrained models - [...
