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total number diff in venn plot
intervene venn -i ./*.bed --output . --bedtools-options f=1,s,r --figtype png --title "precision(100%)"
mv Intervene_venn.png compare_1.png
sleep 3
intervene venn -i ./*.bed --output . --bedtools-options f=0.75,s,r --figtype png --title "precision(75%)"
mv Intervene_venn.png compare_0.75.png
sleep 3
intervene venn -i ./*.bed --output . --bedtools-options f=0.5,s,r --figtype png --title "precision(50%)"
mv Intervene_venn.png compare_0.5.png
sleep 3
intervene venn -i ./*.bed --output . --bedtools-options f=0.25,s,r --figtype png --title "precision(25%)"
mv Intervene_venn.png compare_0.25.png
sleep 3
intervene venn -i ./*.bed --output . --bedtools-options f=0.1,s,r --figtype png --title "precision(10%)"
mv Intervene_venn.png compare_0.1.png
sleep 3
Hi dear author,
I have three bed files for intervene to draw the venn plot, using the various fraction (0.1, 0.25, 0.5, 0.75, 1); and manually add the total numbers in the venn plot for each bed file, while A, B total number almost the same under fraction 0.1 and 1, the C bed file total number added from the venn plot has near 3000 difference (f=1 vs f=0.1); is this normal, how to adjust it?
Thank you so much!
Hi , I have the same problem. Have you solved it
Please check this issue https://github.com/asntech/intervene/issues/27