arnavaz

Sure, here is the list of UMIs we use in our data. We truly appreciate your help and support. Regards, Arna [IDT_barcodes.txt](https://github.com/milaboratory/mixcr/files/8912330/IDT_barcodes.txt)

Thanks a lot for the detailed explanation. I totally understand your concern regarding the diversity of the UMIs. The reason we are using this list in our dna profiling is...

Hi Caralyn, Thanks a lot for your response. The reads are paired. The depth of coverage is on the order of multiple thousands and the aligner uses is bwa. It...

Hi Caralyn, Sorry to bother you again. I just need a bit of your help with mavis pipeline. for the mavis convert command, I use the 'svict' as the user...

Thanks a lot, My file is tab limited I just kept the extension as vcf. I probably should have changed the ext too. I will try again. Thanks again for...

Hi Caralyn, I ran Mavis with the settings you suggested and it worked perfectly well. I had one validated translocation in the sample and it was outputed in the summary...

Thanks! The following is my command. Could you please check if my parameters are ok? We are using a hybrid capture method for library construction. `align -p rna-seq -s mmu...

Thanks a lot for the detailed response.

Hi George, did you follow the instructions on preparing you interval file? Can you send me a few lines of you interval file you are using? And, how do you...

Hi George, both of the bed files seem to be correctly formatted. Make sure you are using the same bed file for running the DofCove tool. If you are doing...